Identify appropriate celltype over-expressing corresponding gene.
Find out if transcription can be stimulated further eg by induction (note: the higher the mRNA level of the gene in question the easier it will be picked up in the screening procedure).
Extract total RNA and purify mRNA by oligo-dT cellulose chromatography.
First strand synthesis: this is done either in solution by annealing a free oligo dT-primer or a oligo dT tailed vector to the mRNA or more conveniently by annealing the mRNA to oligo-dT loaded magnetic beads which will greatly facilitate the subsequent recovery of the cDNA products. In either case the next step is a reverse transcriptase treatment which gives rise to a socalled DNA/RNA hybrid.
Oligo dG (or dC)-tailing at the 3'-end of the DNA strand in order to prevent self-annealing during step f); this minimizes the risk of loosing the 5'-end of the gene in the following step a prerequisitive essential for the construction of socalled full-length cDNA clones.
Second strand synthesis: this requires the prior removal of the RNA strand by either alkaline treatment or by RNaseH treatment followed by reverse transcriptase or E. coli DNA polymerase treatment.
If the first strand synthesis has been done free in solution (see above) then the ends of the DNA have to be manipulated before insertion into a cloning vector is possible; if the DNA is already linked to the vector then the molecule only has to be circularized via T4-DNA ligase treatment.
Please note that the various tailing procedures create a series of fragments with slightly variable lengths at both ends which is useful if translational fusion proteins (eg with LacZ) are to be constructed.
The advent of PCR has also had an impact on the cDNA cloning protocol in the sense that often 'anchored PCR' on the DNA/RNA-hybrid is carried out using conserved regions in order to amplify a certain type of cDNA species which can subsequently directly be inserted in the cloning vector.
RNA測序已經在生物學和醫學的各個領域取得了前所未有的發展。在包括癌癥在內的諸多疾病中,轉錄異構體的表達和用途是健康組織和患病組織之間變異的重要來源。鑒定差異剪接的異構體和融合轉錄本,可以為疾病的診斷......
造礁石珊瑚為珊瑚礁生態系統中的框架生物,研究其重要功能基因對于理解造礁石珊瑚對環境變化的響應有重要指示意義,近期來自中國科學院南海海洋研究所的研究人員提取了澄黃濱珊瑚(Poriteslutea)的總R......
Bio-Rad公司近日推出了一款“高級”的cDNA合成試劑盒,適用于定量PCR前的cDNA合成。此款名為iScriptAdvancedcDNAsynthesiskit的試劑盒能幫助研究人員生成更多的定......
皮膚癌在美國是最常見的一種人類癌癥。為了全面了解人類皮膚癌,科學家就必須利用模型生物如小鼠在實驗室研究這種疾病。這個月發布的新一期《冷泉港實驗手冊》包括了創造鱗狀上皮細胞癌(SCC)小鼠模型的方法。S......
摘要:利用RT2PCR、RACE及克隆等方法獲得了異育銀鯽Toll樣受體3(cagTLR3)基因全長cDNA序列。該cDNA全長3170bp,5′端非編碼區181bp;3′端非編碼區283bp;開放閱......
摘要:從革胡子鯰(Clariaslazera(Burchell))的腦垂體組織中提取總RNA,應用RT-PCR方法,擴增得到了革胡子鯰生長激素(Growthhormone,GH)基因cDNA的開放閱讀......